IRIB Normandy Rouen / Institute for Research and Innovation in Biomedicine

  Research and Services Laboratories

UR4108 - LITIS - Laboratoire d'Informatique, de Traitement de l'Information et des Systèmes


https://www.litislab.fr/
 https://hal-normandie-univ.archives-ouvertes.fr/LITIS

Head: Laurent HEUTTE

  Contact

TIBS - LITIS EA 4108
CURIB
UFR Sciences & Techniques
University of Rouen Normandy
76821 Mont-Saint-Aignan Cedex, France
Phone: +33 235 1460 13

thierry.lecroq@univ-rouen.fr


  Composition

11 staffs (teacher-researchers)
1 PhD student
1 Engineer


  Facilities

Computings facilities of the Computer Science Laboratory LITIS located in the data
center of the University of Rouen Normandy


  Activity

TIBS group is one of 7 teams of the LITIS laboratory (Director: Laurent Heutte).
The group aims at indexing and searching for information in biology and health data.
It collaborates with different labs of the University of Rouen Normandy (Inserm U1239, Inserm U1245,
Inserm U1234, GlycoMev EA 4358, ...) and
also with other bioinformatics and health informatics groups in France (LIRMM, IRISA, CRIStAL, LIMICS, ...)
and has strong connections with computer science groups troughout the world (Catania, Seoul, ...)


  Main contributions

- miRabel: A simple and efficient miRNA target prediction tool
 (http://bioinfo.univ-rouen.fr/mirabel/index.php)
- Package R SMM: Simulation and Estimation of Multi-State Discrete-Time Semi-Markov and Markov Models
 (https://cran.r-project.org/web/packages/SMM/index.html)
- HG-CoLoR: hybrid correction of third generation sequencing data
 (https://github.com/morispi/HG-CoLoR)
- ELECTOR: evaluation tool of third generation sequencing data methods
 (https://github.com/kamimrcht/ELECTOR)
- CONSENT: self-correction of third generation sequencing data
 (https://github.com/morispi/ CONSENT)
- analysis of gene expression profiles of tumors by RT-MLPA (reverse transcriptase multiplex ligation
dependant probe amplification)
 (https://bioinfo.calym.org/RTMLPA)
- UMI-VarCal: low frequency variang calling using UMI
 (https://gitlab.com/vincent-sater/umi-varcal-master)
- UMI-Gen: a UMI-based reads simulator for variant calling evaluation in paired-end sequencing NGS libraries
 (https://gitlab.com/vincent-sater/umigen)


  Latest publications

2020

2019

2018


Last update: 2020/09/10

Nous contacter :

IRIB Normandy Rouen
22 Boulevard Gambetta
76183 ROUEN Cedex
France

Direction :
contact@irib-normandy.fr

Secretariat :
secretariat@irib-normandy.fr

M'INSCRIRE à LA Newsletter

* en validant votre inscription vous acceptez de recevoir des informations par mail de la part de l'IRIB. Conformément à la loi « informatique et libertés » du 6 janvier 1978 modifiée et le RGPD, vous bénéficiez d’un droit d’accès et de rectification aux informations vous concernant. Vous pouvez l'exercer en contactant contact@irib-normandy.fr

Merci pour votre inscription !
Veuillez remplir les champs obligatoires...
Design by Alexis Lebon © IRIB Normandy Rouen, 2023 - All rights reserved.
Accessibilité : non conforme