TIBS - LITIS EA 4108
CURIB
UFR Sciences & Techniques
University of Rouen Normandy
76821 Mont-Saint-Aignan Cedex, France
Phone: +33 235 1460 13
thierry.lecroq@univ-rouen.fr
11 staffs (teacher-researchers)
1 PhD student
1 Engineer
Computings facilities of the Computer Science Laboratory LITIS located in the data
center of the University of Rouen Normandy
TIBS group is one of 7 teams of the LITIS laboratory (Director: Laurent Heutte).
The group aims at indexing and searching for information in biology and health data.
It collaborates with different labs of the University of Rouen Normandy (Inserm U1239, Inserm U1245,
Inserm U1234, GlycoMev EA 4358, ...) and
also with other bioinformatics and health informatics groups in France (LIRMM, IRISA, CRIStAL, LIMICS, ...)
and has strong connections with computer science groups troughout the world (Catania, Seoul, ...)
- miRabel: A simple and efficient miRNA target prediction tool
(http://bioinfo.univ-rouen.fr/mirabel/index.php)
- Package R SMM: Simulation and Estimation of Multi-State Discrete-Time Semi-Markov and Markov Models
(https://cran.r-project.org/web/packages/SMM/index.html)
- HG-CoLoR: hybrid correction of third generation sequencing data
(https://github.com/morispi/HG-CoLoR)
- ELECTOR: evaluation tool of third generation sequencing data methods
(https://github.com/kamimrcht/ELECTOR)
- CONSENT: self-correction of third generation sequencing data
(https://github.com/morispi/ CONSENT)
- analysis of gene expression profiles of tumors by RT-MLPA (reverse transcriptase multiplex ligation
dependant probe amplification)
(https://bioinfo.calym.org/RTMLPA)
- UMI-VarCal: low frequency variang calling using UMI
(https://gitlab.com/vincent-sater/umi-varcal-master)
- UMI-Gen: a UMI-based reads simulator for variant calling evaluation in paired-end sequencing NGS libraries
(https://gitlab.com/vincent-sater/umigen)